Paul,
I had this problem with the Lucas magneto on my Mark 3 Sports. Manufacturing eccentricity between the magneto body, end housing, and cam ring bore meant the point gap was unequal between the two cylinders (cam lobes). However the point gap is not as critical as when the points open, and that should be as near as 180 degrees apart for even timing of the spark. On mine, I took a die grinder with a stone about 2/3rd the cam ring bore size and ground back the leading ramp of the lobe that was too far advanced. I did not bother to try and grind down the height to get the gap consistent.
How long the points stay open does effect the internal timing of the magneto and more gap (increased lift) will extend this and less will decrease it. But you won't notice the difference as much as getting the points to break exactly at 180 degrees. In my case, I split the difference of the recommended point gap between the two; one being a little over and the other a little under. It has worked fine for almost forty years.
-Doug